Scaffold Ga0213858_10000925

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10000925
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13797
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020536	Metagenome	223	N
F020892	Metagenome	221	N
F021100	Metagenome	220	Y
F027836	Metagenome	193	N
F090343	Metagenome	108	N
F093801	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000092510	F090343	N/A	MRLAAYVEHTTDVDGMLDTMTPQQFAEWQAFDSLEPLGDRGTQDILAMIGCLISGYMQATDERGDEIGPYHFTHWREKPKQHNAGARQLSAMLQAMGAQKSG
Ga0213858_1000092512	F020536	GGA	MQIKLIRSDLGVAAGVADSEDVIHRDGRRWWRCGAIIDVPQRACEILVGNGDAEPADDEAEAACAGWRDKRAAVLESREMLARGIEPKDREAYRRGELTGYDADGNPVNEGAE
Ga0213858_1000092515	F020892	GGA	MSLIESAIAAGLQMSRQAAGVPVTVTRGGTTITVAQAIQGETQKVPLADNSEITVDAADWLISVAAYTLGQPQNGDIITRRIDGTAYTYTVETPDYGQQAWDWSDTAKTTYRIRTRKDGGSAYDVSKPNGFDLAGSEMRYD
Ga0213858_100009252	F021100	N/A	MKGNTMNNEQRIAQAATAIAGSIFEDCDHTWLPAKLHFCLSWRNQGTVYDLTQADRDGLRLLLDAAINISSKLCNSETSEAIRTATVEEVCESVLAGPEGHIMVDGVQCYCEL
Ga0213858_100009253	F093801	AGGGGG	MFQYPTENTTAPVCPYCQASHPEPEDLDESEAHCVACDDCGKLYGAYCDYQGWTTRCGGNHNWHRMNGVRVCSRCGADE
Ga0213858_100009254	F027836	AGG	MDNCKACGIPLEDWEELSTHCEGCEQMAQTKQLPADLWTIGTALADAVGIARTTLISAADRAAFPVVVLGCGSRAALRADVAAWVANPRGGE