Scaffold Ga0213858_10000480

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10000480
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19186
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F009922	Metagenome	311	Y
F020608	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000048011	F001521	GAGG	MTMTKLWITEFVNEEGIGLGPYIKADTVGEANRIAIQYGLLVLGEIQELQHDTKVKERTL
Ga0213858_100004806	F020608	GGAG	MKTKCKNPNGKLNMQTILDSKSKDKKFNSFDKLERYINELGYTFKVQNCFKEDRSIIYRHKSNKKQHLFVKSTYDFLNNNTMEMGTVWTISKL
Ga0213858_100004808	F009922	AGGAG	MENTFDINSFDKDRTSAPASFNQCRAIGYKFAKKGANMNWKLQKQIQGCLYSLAKDERLTFKKAHQILQGKSLPKVYLDKIALYLKENS