Scaffold Ga0213858_10000212

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10000212
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28640
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031465	Metagenome	182	Y
F054002	Metagenome	140	Y
F074763	Metagenome	119	N
F097234	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000021221	F074763	AGGA	VVFKSHDQGHREQEYDRMKFKITAEVEIDDESSHLPVTCDSASKKKEGEKVISDIVKDLLYDMDDIEINSIKVTKI
Ga0213858_1000021231	F097234	GGAG	MTELFLGFAAFVFVEQNKEFIHQARENKQNGYVWELDPGFVSKDALAIAFEGNGERAVMWRQKKVVEVRIPLRKPKEMK
Ga0213858_1000021238	F054002	AGGA	MKTIKIEPKDRIELLRYVNVLREFNCNTSEKIPVYYEHICEIETLMYRLANLLEFEQQHRGGWYSDYLLKEDLPKEKNNE
Ga0213858_1000021241	F031465	AGGAG	MLLNRKMVKDLRAILDDALNDNESLEQFIVEVGSANFNDTEVTFKVNLRMKGAKSQSEKDLEDFASIDGLDLTKVATLDGKEFKLSGFRRKARTKPYLIQDLKNGGEYIITTDTAKRYFGKGGSE