Scaffold Ga0213858

Basic Information
Taxon OID	3300021356 Open in IMG/M
Scaffold ID	Ga0213858_10000196 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021356 Open in IMG/M

Scaffold ID

Ga0213858_10000196 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29410
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (73.81%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

29410

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (73.81%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025289	Metagenome / Metatranscriptome	202	Y
F033826	Metagenome / Metatranscriptome	176	Y
F051947	Metagenome / Metatranscriptome	143	Y
F060923	Metagenome / Metatranscriptome	132	N
F089555	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_100001962	F025289	AGGAGG	MEICEEKTFSRWSMKKEIEDQLEYYDTITDDSIREICDGLVPVYNAELIDMACHYSGEEYWDIWNDNQLGGETPLDIVRGNIFCLYLEIGQEVLSELGDEE
Ga0213858_1000019626	F060923	AGGAG	MSRVEWDAENETYAEFKKRRSASFNISGMGQKKREGTGKKNLSELREKALQRANYKCEWPGCNSKKWLEMAHLIAKGMGGANRNISDDPMNVCMLCKEHHDIFDGRQRQGSNREYTNLLKGFLVLKWRHDK
Ga0213858_1000019632	F033826	AGGAG	MALCSASDVEQFLQIDLNSSLETSCTNQFIPYVDAAIKRFLGYDVEQATHTETFDGNEQQDLFLRHVPIASITTLTEDGNTLTQGNEDDYVYYDNGRLRRIGLRWSAIKPKNISVTYVGGYASSDIPDAIKFTSAKAVSRMVMTALQISAKADSGEVGSHLADNTSTSSFDVAITERIGDYDVAYGDVVIQSLTPVLTTADMAILNPFRSRFFV
Ga0213858_1000019636	F089555	N/A	MPLRQKFLPETATIQTVSDTNVDERGLPSDSWDNTYTNVKCKFESQGAEEDRDGRNTTTESFMVYVEKGVSVTPGDRLVRGSDYHEITMVQPVLDRYGVECYKRLLTFVAK
Ga0213858_1000019638	F051947	N/A	MGIKKIGVRHPESQKFPPDAEIIFREWAINNTTITDVCSTRVATRLPRNATLPFLTFFVAGGTMVSPGGDAAIGNVSIQVNCYAGRWGTGSTSQPNYSQAYELANAVAESAFKTAKTLVHTPTTSTKAVIYGFDIVEMPSRVEETDTGLGHYQLSLSMYYRGLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213858_10000196

Overview

Ecosystem & Geography

Associated Families

Sequences