NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10000122

Scaffold Ga0213858_10000122


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10000122 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34156
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (94.12%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001873Metagenome623Y
F002942Metagenome518Y
F004131Metagenome451Y
F012970Metagenome275N
F013880Metagenome267N
F015083Metagenome257N
F015341Metagenome / Metatranscriptome255N
F016522Metagenome246N
F019999Metagenome226N
F026887Metagenome / Metatranscriptome196N
F034164Metagenome175Y
F034557Metagenome / Metatranscriptome174N
F037706Metagenome167N
F043375Metagenome / Metatranscriptome156N
F050337Metagenome145N
F052561Metagenome142N
F074816Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1000012211F037706GAGGMTRKHIYAEGPGLRPNSMGIWQNEAGFLLYEDAEEIQPGEHVLADLPEEERDRNCHQAYQFLIKQHDMTREEWLATCVITTEQPTRKEGRHEDFDWEEADATPVLVIRRAWDR
Ga0213858_1000012215F052561GGAGMRKLSDIWLIGSKLAKHLQVSKTGLYRAADSGELRTSALGCGRLATTLQEAERWLRQTRA
Ga0213858_1000012217F001873GGAGMKWWNVLAVLAVLSGGAEAGVIVMSTDYTAGGVFVATPTDGKGDLIQYDLTDLGGGGAVWLNADGFHNNHLERQYESRGFRYGIKRIPGAVPDDISEFVTVDWIQHHRDGAVEFGGNDSRGMVEMFAERDINLQPGFLEITLRNDHEYALWSVNGQLLYEHITNQSNLQTFRHDLPNGLEGLRFDFSGSGTADGVIEHIEYHEYSTVPEPSLGDLIDLIGNGIGGLIGW
Ga0213858_1000012218F002942GGAGGMTEEQFTAFAILLAAVSLPGVSLLFAGAWELWRYAKRAEP
Ga0213858_100001222F034164GGAGGMSKPKRADPTPEEIAAEAAKIRAEWPEHRWAKELPEEPAVQAQVVKLDKRWNGVLM
Ga0213858_1000012220F004131GAGGMRATRTTVVADVSQFPFSVMRRQLITPLVREAAELLWPAEKRRVTVLLRAPEYWDESENADLEASEELADICFDLWVEATT
Ga0213858_1000012226F050337GGAMANLQTLHDELLIGHPDSGQYPADAQLAADQINALNRVRLIPITSGNLLAWSGAKSSDTDRPRIIKIEEGQQSPVEDIAAICKVASETIRRDGTELDLSRADRVAMVDGLVAGGILSDADRASLYALATQMISRAEELAIGTVRAGTVEMARALSEDAV
Ga0213858_1000012230F034557N/AMTQSRYIVTDQEGARTIQRLIQSEGSVSGGGLTPSPIPTGQAVVVRLQSAIPAGSVDGVTADVMHLQGGSWETTGATVEVRSLTGQAVSTTGRRIARRIGRHGWGVVET
Ga0213858_1000012231F019999GGAGGMGTAKLYRRGDFQLAEDGAESVVDVWRVIATSETETITSILASSGLPSQGDSHPEKSAAIALEIDATQDDEVLTFWLVSVRYKTSITTRENAAYASQRTKGGMRSSRIERPAFFDARGYPLVNTAGDMYEGLGRPVRTRTVNVTHNATSIPDYIFNLSDTINAAAVTILGTSYPALSCKLTDVNCPDEPSRDKDGDLYYPVSYNIEINPTGWHILLPNKGPNQLIYQTRTSSTADWQDDTKTNYDNKTPTTDRRIVKRPIESEEQQNLGGEIWLDEDGQATPVVSLTGASIGTANMYSGITTITMASGTLPETPGLLIRVEGAGLKGRYHETRLVSVASGGGSGVMESAALTDILGADVYASGVIVNEFLLEDAADWSSLPLPNNQP
Ga0213858_1000012236F015341AGGAGMTDAAAGSVLGDDCKLYYSATLGGAGTLTEVPVVIDDTLNSERRAVESNCRGDAEVGELIGKPKHTITGTILLKRDSAGVGATFVALRDAYTAGTVLHFAMATGDITHIGQYVFRMEGRLKRWEQSQPDNDTVKVSFEITHAGENTYASNFATVTS
Ga0213858_1000012238F015083AGGAGMASRSATLANALVTAISGWASLPSGVTVARVRSVTHLLVDMPTAAVGRVAVIVSSVEDQSSRGDVAEDVTVGIAVIGNCDSEAVAQSDSWDEFTEELRDWLRTDSQFKSMDLGSGLAAQRRSVSTVTVADADMLDENEIFVSVTEGVWFTSVGAAA
Ga0213858_1000012239F026887AGGMSSPVATAAAAAREASRRVRGEIVTYSRGAYSVTLLAVRGTRDWSRVAPQQGVKVGDRSTDWLIKQADLVDSGAAEIQPQRGDEISVDGVTFRVMPYGPDSQLWMYHDRDRKYLRVHTKERV
Ga0213858_100001224F013880GGAGGMARFIPESEHQNSLTVLYDTMQVGDEARVLRSREMAYVLLKSVWYNRDRPGKMERGEEVPWLYLEPTLARVNGEVIEATMVVRVADEVECWAARKKFLKESKK
Ga0213858_1000012244F043375GGAGGMAKKKQAGRPVGSKHKDRPVTDEQIAQCPHCGSSNRGQFASVSRINGNGTFKGKQYSSVELRRCSCNDCGGAMIVRRHIWI
Ga0213858_100001225F016522GGAGMPHMVYKLDSVGRRRWLVGQLTEGDMTEEITRKPISRHGWSPRQGDARRFGSEPEARAAANAVDHAVRQLGLCQVMEVV
Ga0213858_1000012250F012970AGGMSDKTYNQQAAERVAKRIPDGFGVDPMTVLVLLQTVIPAFLNCLNRNDDTDPDTVFNRVKKLYDRNPEKLLRRTKRNCLSRAREEGTRLSRAQAEDMARAIILEAIGTEPVFGAALAREVEDVD
Ga0213858_1000012251F074816GGAGGMSTKQRDIVLSIIRHGLTLGAGALIASGKLDEAGANELVAALMAVIGIAWGINDKVKRVD
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