Scaffold Ga0213858_10000049

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10000049
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 50429
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004428	Metagenome / Metatranscriptome	438	Y
F025990	Metagenome / Metatranscriptome	199	Y
F076255	Metagenome	118	Y
F104965	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000004914	F004428	N/A	MIGEISAIIAGVNAATGAIKRVAETTNDIQSISGFLSTLGGAEVELARAQNEGKLSEADAVKAALAKKQIQETMQEIKDLFTISGNGQLYNEAMAAMAEARKAKQQELARAVAAKKQFWKDVREIGAVIGVILILLPLILAVLLSYVTR
Ga0213858_1000004917	F076255	AGG	MTLIKLLPILILLQGCTWYGEFEHISSVPNGSPFNDRSETSTDIVWTGLKIEKDTWYVDGALGYETSSEFEGRNPYGRIKIGKELKTWD
Ga0213858_1000004927	F025990	GGAG	VKDDEHPVYRAQFYIQELQKYVTWPEYLAYYKEQDDKIMMFSTYCMQMWSSYMNDKIKQKEAPLSYKEYLNKYKELLEEGYSARPQD
Ga0213858_1000004940	F104965	GGAGG	MSATDTREEFCSDVDDWWCQLFALRIGVSPPSERVKFKFINFVEDRCSEVGSWRIQDNDLSMLFVEFIDRNCE