Scaffold Ga0194047_10079430

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10079430
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1428
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017133	Metagenome / Metatranscriptome	242	Y
F074868	Metagenome / Metatranscriptome	119	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_100794301	F074868	AGGTGG	MTTLNKINIGLALGISGALENRIIHDFNNGGCKSTYGLDFGQRKMLIKILFSGLAPKCECVVCI
Ga0194047_100794302	F017133	N/A	MTNRIFEPMATIHNFPKGMMNLCPCGQVVLAPALYHKGETYWENPNRCKELFEEINK
Ga0194047_100794303	F095359	AGGAG	MTIKIGGLGQEISCYCPVCSEKMTHRCIATLGGMNSKGTIRYAYQCDSCELELKSDSKGNAKLLKEMENV