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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021354 Open in IMG/M |
| Scaffold ID | Ga0194047_10015420 Open in IMG/M |
| Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3829 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 49.701 | Long. (o) | -93.727 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030662 | Metagenome | 184 | Y |
| F048735 | Metagenome | 147 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194047_100154201 | F048735 | N/A | MTYNGLSLVQPQDTTYGLSFLESSPQFVRELVAYRLTRGEFGRRERIKMGIKINECGLLSPAQHMINAFQLIYGNDVLLQSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVVDWLCAPDYTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAQHGKDASIGHLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLFALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVTRYTKKWKTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTVEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQSCDIGWQPVWSGKTKVVCGFDPAFTAGGDRCAASFCRLGPNDTGRSLGYYLGTREYSSSVGEVFEESIAMQIVKDCLEYGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTERKISNLDRRTCKEAYDRLVTEYWFAVHTAMSTKSLVGIDLETHAQMINELCSRLYQHKGRKVSVEKKVDMKARIKKSPDLADSLTYAVEMLRRAGLEFTFAEESESLDIQEIRDWERHLIFEKGKSDDPASDEDMSYAGTAFDEDGF |
| Ga0194047_100154202 | F030662 | AGGAG | MRLKDKNASIPGGLWYQYSDDKGNTYRVNGMDLPYGRSFTQKVSSDMTINNVAVPDNLDYLIEQQICNRIGGQYCWQEAGDKVANVIHSFANLGDRVAASIGVKTNLEQTAKGCTACQKRRQAMNQALG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |