Scaffold Ga0194047_10002109

Overview

Basic Information

• Taxon OID: 3300021354
• Scaffold ID: Ga0194047_10002109
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11569
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.701
  • Long. (^o): -93.727

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F012435	Metagenome / Metatranscriptome	280	Y
F030055	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194047_100021091	F011282	N/A	MKKIKNLVVITGTYTNKDGQEKKRYQTIGSLFEDGENLKIKLDTIPLVDGGWTGWANCYELED
Ga0194047_1000210921	F012435	N/A	MDIDPVKYGVLWQKVESLEAKIDKLETSMDKLLELANQSKGGFWMGMAVVSMVSSVAGYFSNWLHKG
Ga0194047_100021095	F005737	AGGAG	MFDIEKYTKPTDWSQVALWIVSAAAIVVVILDVLYWRT
Ga0194047_100021096	F030055	AGGA	MRHIETLPATDARIMIDQGLEHLVVEHDDLIVPLDCYFCPITGNLWHAYLGTTELYNVLSATVIAAIEREFAPLCV