NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10001628

Scaffold Ga0194047_10001628


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10001628 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13535
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040527Metagenome / Metatranscriptome161Y
F044362Metagenome / Metatranscriptome154N
F100653Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000162819F044362N/AMMHFNSLSSTNAVLLEIQKIVRKKEVLEQIYQFTQYRNVAILFSSTNKTGCEQMIWLTNDMLPFHLPNEIANILEDSIEQYNKDISSLNQHLKNL
Ga0194047_100016283F040527N/AMDKQKSLELIKQVIDQAIKGGLFQNVDTAVAVAQAFEVIVKEIQKPASVDAEIV
Ga0194047_100016287F100653N/AMKNKNTMLLLGIGIAYLIYKMYAKKSVVDVTKTPVMPPIINYPNPNTDIINVTSLPNQFLVDKINTAELSYQPSTYQTYYGSITGNGYKVPSTC
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