NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10000635

Scaffold Ga0194047_10000635


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10000635 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22903
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (83.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F014955Metagenome258Y
F017107Metagenome242Y
F017287Metagenome241Y
F027764Metagenome193Y
F029048Metagenome / Metatranscriptome189Y
F045569Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0194047_1000063516F045569GAGVEIDPVKFGVTWQKVENMEYEVAELRKDVKQLLELANKGRGGLWAGMMVVSAISAFVGFISHYITSK
Ga0194047_1000063522F027764AGGVNIQIEIIKENKDGSADALVHFDAEGLGILVEAGIISILRQYIEQEKNVNKRKKR
Ga0194047_1000063526F017287N/AMESYTRRVFEGEAPCDKCDQADDCRAYEWACRAFSYYVFHGTFEAHTARVPTRELFDRIFQDDDKALKNYLKALKEKQ
Ga0194047_1000063529F029048GAGMNMLSQIKDVIGDKAIISTEPFGVDEERQLIAFEVNDLATVLRDVIQVCADCCLNDIDREAILELLN
Ga0194047_1000063532F006255GGAMSELNQLMLEHEEFLESALDDMEFGGELSQEQVDCIRQACGKPKRNSHVDPLLQDVVNTFANIFGNPLASFPSIRGEK
Ga0194047_1000063539F014955GGAGMLEKYIVAATGLGYLVVGLAQYAKGSTSNGLIWVGYAAAQVGLWMNLK
Ga0194047_1000063541F017107AGGMTDYSENYLRIQKLLKCYHNATLKKQYEKATLIAHDLAEETIKLEFSTYAQVKQQWLK
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