NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10000219

Scaffold Ga0194047_10000219


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10000219 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39006
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (75.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F011148Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_100002194F002085GAGGMSNNIPPVQNTNNIRYADFVRVTTPTATYRFSTAPSSLTITEVDSLPFSGLGQLVKISDATRDIKSTANETSITMVGIDTAMLGFVLGHDIKGSQVEMWHGFFDVDGVLENTGGSGGLYQFFNGYINSFAISEQWFEEARQFVGTITINCSSIQLILQNRTAGRYTNNNSWEFFTAGDTSMNRVAFIQTVNYNFGKGAPANS
Ga0194047_100002195F000934GAGMPLTSILAISESVAINDHRFVGQMVSRNQRISTSEVLTVVPFSFELKPHNYLLYSQNRALLANLRYYDKALEQNLNFGTTGWVNYIAYQGDMTSGQITTCAWQTSSAAKNLVLGSLPSISSTAYIVKAGDFCQVGRYSYIATADVLRGSGSSVTIPVHRNLIATLTSTIPAVIGQYGTTISMGVSTYTGVTFPVVLRDYPAYNLIPMTNDSFISWSSAFIAFEVVL
Ga0194047_1000021955F011148AGGAGMAVFNKNTLTQISGFDNQIIAGELVYNQKTYWNLALINGGTAIDLTGATINAQIIRRKLSNVQDTRYGLSFDIADYTPTPTSISLTITNRSDITGSFTLLFDDSAWALTTTDTDLDIASINGAGFSGRIKISFPASGTTPANDLIIFLLFLVRSDAIVVN
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