NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206680_10268077

Scaffold Ga0206680_10268077


Overview

Basic Information
Taxon OID3300021352 Open in IMG/M
Scaffold IDGa0206680_10268077 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)663
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002874Metagenome / Metatranscriptome524Y
F027865Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0206680_102680772F002874GAGMKEKTDLSLNRSLEELESSYWEFIEATEGEDSSGWSKSVQEDISALEGYLMKMEIL
Ga0206680_102680773F027865N/AITLNSMDTYDMKFCKLTRKFEEKSVTEYKNVYNDLMRGTFTAHTGMYTSLF

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