Scaffold Ga0206680_10058974

Overview

Basic Information

• Taxon OID: 3300021352
• Scaffold ID: Ga0206680_10058974
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1472
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021787	Metagenome	217	N
F024125	Metagenome / Metatranscriptome	207	N
F054936	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206680_100589742	F024125	N/A	MKEKIYEKTLNRFTGKVLTCDQCNAEDSKENEVREWGNPYDHGFICEECDCHET
Ga0206680_100589743	F054936	N/A	MGKKYYKTPLNPRPNGQSGSLGKVSDSWDDCDAMPHYTYSKGWWAETKRLVDESYARLVAKGFFDDTSDYWAKRRKTDPRCQGQK
Ga0206680_100589745	F021787	N/A	MTDMISCEEVFGVDADARAEFDVVCDEWLNESILAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV