Scaffold Ga0206680

Basic Information
Taxon OID	3300021352 Open in IMG/M
Scaffold ID	Ga0206680_10005370 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021352 Open in IMG/M

Scaffold ID

Ga0206680_10005370 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4767
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4767

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	150
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

150

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F001930	Metagenome	615	Y
F005685	Metagenome / Metatranscriptome	393	Y
F006919	Metagenome	362	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0206680_100053704	F005685	GAGG	MKKFNEYSSFEDKILGTLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKRTKKN
Ga0206680_100053706	F001930	AGGA	MKRFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIISSKSDIMSQPDKTGRRWVALYNIDPKYKMEKEMTQMLIDLAVKHDPRNKEYLKTSPEIGVGVWWKLQSDLQTNFAKDKAGKKMALIIADYIDGVNVILNKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSELSEWSAWDEQVVDKIKIEKVHTYNTARRSGDWVKTDIIPNLGKIPHKHWKSTKELSTYISQVADAEVRVLRRSKG
Ga0206680_100053707	F001493	AGAAG	MKSFKQYLQEGPPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSKVFHLTDLDGVGKLKKMQGKKKSISAFYNIEDYILTGGIKTDGGYVVELEGDVLAAAPDDVSSQPDKTGRRWITFSSLMNPSTASDPGLSGGKKLKGIEKDLEKLLVEIMTKNGLGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGDKAMWDEIVVNNFKIKKIHVTEEFGEDWQEDDDIEGFPFELYPNGNGDLIDYIARTRN
Ga0206680_100053708	F006919	AGGA	MKSFKQYLIEFAIRSTSDYVFNAGFNSSGLMIPISGPMFKRIWPDTIRTTVFHVLSAEDIYELKKLEGKKKSISAFFSMMARQFEGGIAAGGGVVAELDADVLISARDDIMSQVDKTGRRWVEMSWFANAQSYGTGPKFGKVEKELNSLIKYLVSKHLTSILGKNTVISTHEYELWGGMKRHLKGDGKKLRLVIKDYFDGVERVIKKNKEVMSSIFYGYAKSKRQTDNAWDEQIVNNIKIKKLHYLPKEEEVENEEQQENIDAFVAKYKIPAKAWSYSSELEIYTREVVAKEIGRKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206680_10005370

Overview

Ecosystem & Geography

Associated Families

Sequences