NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206692_1536765

Scaffold Ga0206692_1536765


Overview

Basic Information
Taxon OID3300021350 Open in IMG/M
Scaffold IDGa0206692_1536765 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)895
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016882Metagenome / Metatranscriptome244Y
F057678Metagenome / Metatranscriptome136N
F061281Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0206692_15367651F061281N/AMNKFKKRVLKQFPNACVESAANGLRIVNNDQVLAEEFYMPDTHCEDTAWEYASMACKLTQNFNRAHPLRMDLSDVENKLARINRRKRNGRR
Ga0206692_15367652F057678N/AMIEYEINDKIVFRYNNVNEIGVITNVRRHKKTVIGYDIRSEKGSGYVLVQVESNLTTRQRNKRTEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRANFPKGYPLYFDGEDGGGMHQFEKHNDLILPTQGPRSF
Ga0206692_15367653F016882N/AAYYVSRVKIATDTPKGVKWLTESYLINAVSVGHAEQLVHEDFKDSGTEFEVKSVSASKICKVIGTTKKL
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