Scaffold Ga0194052_1007409

Overview

Basic Information

• Taxon OID: 3300021349
• Scaffold ID: Ga0194052_1007409
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5321
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F083632	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194052_10074094	F002540	AGGAG	MTPNYQGTADEYAKYGASLSIWQQLALLQAWAPLIGYGQRFVNEVDPYRKGLVVSDAAEWLASKTNAQADDQLVRLLADILKTKEGEALVRWCLMQAEGAK
Ga0194052_10074099	F083632	GGAGG	VSLEDLDDYVWSQLSPRRYVAGRALVSRLTRRAVRKWPHVTMSQTRPEQYAVVTDEITRSIERIERQNYQMGIVLSLILGVLLQEIIKAVLRWWLKSASNRISLVGWQTEMRNA