Scaffold Ga0213862_10144199

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10144199
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 837
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F011124	Metagenome / Metatranscriptome	295	Y
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_101441992	F002430	AGGAG	MTLKLPYTQVNAILVALDAEIEMQLGGRPVDWESFPEVAALLMAYYTTRCKFEEDDYNEQ
Ga0213862_101441994	F011124	AGGAG	MFDPDKSYSVLVWDMPVAVWDDDADDYIRNEDGSVKLFEIPNYDYSYICDGIEVDELWEIDA
Ga0213862_101441995	F049286	N/A	RLTMPRYEVTRSYTVICVATVEADTHDHAEEIACDSGDIHWKEYDGDYDTEVYVEEIDDV