Scaffold Ga0213862_10056717

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213862_10056717

Scaffold Ga0213862_10056717

Overview

Basic Information
Taxon OID	3300021347 Open in IMG/M
Scaffold ID	Ga0213862_10056717 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1394
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004166	Metagenome / Metatranscriptome	450	N
F007087	Metagenome / Metatranscriptome	358	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_100567171	F004166	N/A	TYDSWGSYATNKETKKQEFWFTSYKSRDECIADMQWQIEGGEDDSRQKISNWHTKPYGCHFMSNNKWLSIYNYLIYKDENLGCLWESSNPNVRIKYSVTLKTFANVPEQGRCVLGG
Ga0213862_100567174	F007087	AGG	MKKLLLIALTIPNFVLADEFKLICEGEESKYRNDVLENTSKISLKLQVRDDSILVDSMTYKSKTFDYGAVKGSSKYVKEDAQIVLETTQVSNDCDTSLLNVKLNRTSGMIETISKRIGTC

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