Scaffold Ga0213862_10043165

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10043165
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1626
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F008346	Metagenome	335	Y
F013639	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_100431651	F013639	GAG	MKIDKQKLEQKIKEGKSSHDIAMTYDVHPSTIRRKAKALGLKF
Ga0213862_100431653	F008346	GAGG	MPIKLKPSAKIRDRATGKTTTEHYYLKCMTLKELNDYIESPSAKKKVIQKCKNEIVRREK
Ga0213862_100431656	F002221	N/A	YGISLLPINVPSNIGIIMKTYIDETLESKLKELRTYELDTYVKWGNRKRIFKMVGVQFEIKFCKAEQLLKESLQNDSAQKKLKMVEMMIRAFEQLDIKCEESGYIQIQPNARCFNFDNKTALICDTDADKPILEKIHKDEKDMVIFSVEELLRCIPKDFMQAKVLLSKLDKSVNFQKVNY