Basic Information | |
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Taxon OID | 3300021347 Open in IMG/M |
Scaffold ID | Ga0213862_10036106 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1800 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012041 | Metagenome | 284 | Y |
F014263 | Metagenome | 264 | Y |
F047109 | Metagenome | 150 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213862_100361062 | F014263 | GGAGG | MILDDQYITRDMLTKDSYEGNNFAEGNVVKYDLQNGKINVICFCSDENVAKGIAEGLNLLDNLEADGIEVKKXHNAMTDTIIEIVRIGLWSTSASRSIKQSLIWL |
Ga0213862_100361063 | F047109 | AGGGGG | MKKYKVIGGYTVYEQYEINVQAKDDKEAIKKAEKIPVEKWSELQNSNDGGFIIDDVWEDE |
Ga0213862_100361064 | F012041 | AGAAGG | MKKYRVSLEVDKEWVKNFNLTFDAVDEQDAEAQAMVEVKMNLGDYITAYADEEGDEXKNIKL |
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