Scaffold Ga0213862_10024683

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10024683
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2230
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012403	Metagenome / Metatranscriptome	281	Y
F017755	Metagenome / Metatranscriptome	239	Y
F035971	Metagenome / Metatranscriptome	171	N
F067120	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_100246832	F017755	GGAG	MAKRGAIIDMGRHKAVGSSWKAMDTLAFSRSYEPETRPEFRVYVTGQADAMLEQYKKDVDKAEALAILAELL
Ga0213862_100246836	F012403	AGGAG	MRIKPINPVAKAVAQSRRRASVVPDKTKYNRKKDKQDANQVGKHEESKDN
Ga0213862_100246837	F067120	AGAAGG	MQIKLENMKNQKTTKPDGKRDHWRLHNKRKQNVRRIARRNTQIAQEQSYG
Ga0213862_100246838	F035971	AGGAG	MGNLTWNEVAQTETDKRYMDMYGLSQLDMEDMLDEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSNVGLTPATNTQL