NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10021268

Scaffold Ga0213862_10021268


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10021268 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2424
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F001614Metagenome / Metatranscriptome663Y
F017291Metagenome / Metatranscriptome241Y
F038153Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0213862_100212681F001607N/ASSSANIFDNTNYQFVNEGTEIRVSAAVVGANDGIQGANVNYRFTINNTEFADDAIVPALVTGEPFTDGSTSYRTNAVIATGQSRNRPLLVFRNQTAGTLIVKFYVFISQQA
Ga0213862_100212683F001614GGAMLDFFGTYGGHICGFGGFLTAIAALLYARARVAEFERSVHDIDWQVISELSLDVAKLKKAAQKWQNNENANVKVSQKDLLERALTERLIQQSGTVQPIRKMEM
Ga0213862_100212684F038153GGAMGGQTTGDVGASVGEFFGVPQAGRRAGEAVAGFTGRVGEVLDVSERPAGVDSPATVAPVSQTSQVQRQIIPPSAQGFGMQPAPQQAFIGGFGPLVSQGVAQATRLLSRPGVAPTVGGFAAGAVADFFVDQFGNTKKLVITRKMQRDVKKLFMMSGGDFNMTAQLYQMATGRSISGEQVVQIITKTFKNQGPYVTKAAVRKTRSTIRKMETLCDLKDRLAPPRRAAPRRRATTATKILQVK
Ga0213862_100212685F017291AGGMPVLANNVSLTAGSSSANIFDNTNYQFVNEGTEIRVSAAVVGANDGIQGANVNYRFTINNTEFADDAIVPALVTGEPFTDGSTSY
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