NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10012202

Scaffold Ga0213862_10012202


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10012202 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3311
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033250Metagenome178N
F038464Metagenome166N
F045425Metagenome153N
F075427Metagenome119N
F080627Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_100122022F045425N/AVADGTPYSARWTGPTLITKSHDTTVTVDIEHGGSAPTVSAVTFSLYSPNGTAIVDGATASESGGTLSYTVTAASMSSQAYDQGWALKFSATIGGDVHDFYNDGALCLARLYCPIGTTDLTNRYSRLAALQTTGASDLQKFITDAWTELTARLYSEALPFWRMRTPSSLRPWLIAQAAVFALDDLALTLGDGGPYREEARRIEESLPRLYNKIRSLMDDNEDNNLDEVHQPASAVIQISSGRIGRYRS
Ga0213862_100122023F080627N/AMNYATALTATIGRLTAAGLIECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSREAARVDGLRVTARFTVQLGHELKPGAGLEAPSQALQDLHSAQRYLIQPGTSLTTEGALTFGPVTTTRLQGGAYMIQAFELGVTFNLDMSAP
Ga0213862_100122025F033250N/AMDVKLTTTRQLSPVFDQGGELDLEALRPLLEQHAATMVEDARTGWPVDTGISRDAWTAEIDVSPSQLFVSLINEARQRGRGYAVYIHRARSQRLVWTEVQERLTLNLIPALQADIALTLAESMRG
Ga0213862_100122027F038464GAGGMDTITLSPLHDLQIRKPAEWTALVDLTVSWPTDPEDPRFRSRLVRCSAAAIGLVLDDERLPVPAYRTASMDPVAYGVSVLEVLIPQRVQLAEIIRAGREVADWLAGTLPSEQEVSQTADFTDGGESRT
Ga0213862_100122028F075427GGAGMCLRIDRLWGREPGWFLTLDRSVQVQLLAEHRLLTETPEQAKKKAQQAKRAEFDRRMRQ
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