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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021347 Open in IMG/M |
| Scaffold ID | Ga0213862_10003602 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6340 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (17.65%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008384 | Metagenome | 334 | Y |
| F013231 | Metagenome / Metatranscriptome | 273 | Y |
| F016811 | Metagenome / Metatranscriptome | 244 | Y |
| F024348 | Metagenome / Metatranscriptome | 206 | Y |
| F056899 | Metagenome / Metatranscriptome | 137 | N |
| F063073 | Metagenome | 130 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213862_1000360211 | F056899 | N/A | MSRNTFVRASISGDYGQDLVMKYLEDKGYKVEEAPKKLFYDWDVKGVKNGRTVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRDCDSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLHMANYRVVGNSATGDDNAQGWIPPLHELLVSRYGYKATIDLTEYA |
| Ga0213862_1000360213 | F063073 | N/A | MKLTAEEKSSMPIHSLILDRRKAFSELIRAYLRFNVPSAKKVEVMPNGSLSINDNIFKVDISDYTGVEVGFGYIFFNPSSGRLVIEKDNVRKIYKVEVDLLD |
| Ga0213862_1000360215 | F016811 | N/A | MSNEGQMIYDVGVRLAWKKKRGNGYINMYQGTKDRPFQFVTRAKSLDHINRNAEMIAKMMSFVGATGKSVYDFHIIEEFYRKEISNSFSHKEEDYEKEFGQ |
| Ga0213862_100036027 | F008384 | AGTAG | MPRYDKAIIEQEAIRSVQQGRITEELGKFILQRSIEVAGSAFVTDGNEELKQALIDAAVMRTCEKFLYYYIKNKSAANLIISIIYSTMTNKIVSLNHSDVYGHNIKGYLTYIEDGESVTKLKRYIKDDYLSEKL |
| Ga0213862_100036028 | F024348 | N/A | MILEEYYEDLSDDEANLILDIYHVIDALVYNNEPVSLVRLGFELDIKPQELSDYLPTIVTILNKVEEEYAEVRQGYH |
| Ga0213862_100036029 | F013231 | N/A | MINQKNYQTCKLIKNRIDLYLYEMSLLFANLGTDSTVEEHQDAYRREKEYIELIAELDPEKADRLRSSY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |