Scaffold Ga0213862_10002770

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10002770
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7192
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (27.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033757	Metagenome / Metatranscriptome	176	Y
F037817	Metagenome	167	Y
F080032	Metagenome	115	Y
F097128	Metagenome	104	N
F104969	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_100027702	F104969	N/A	MKKQKERDILSIEILYDDKEELNELVNSEDFNRLMFEEAIVTIENALNKKRETARMFYIPNLDCSVVLKQSNFKKVLDTAIKFYEQQEEYDRCAELVTLKKKVNGPKKRNKGGA
Ga0213862_1000277024	F037817	N/A	MKMFSTVLIPEVEKGMEYVVTAQIDSVNPEMDSRPGPYYLVQGVKRGTTKKLKKANFKQGKLYNHADVILA
Ga0213862_1000277029	F080032	N/A	MAEKKGQTVKLKYDFPSYLCCEVYIPNLGWWHRITPKEFRSWCGQRRLLKFKGEFGTAERESYYEEYDGPTYLYDSNKKINPSKYIQNKVAFLHEKDPREFVPRNGRERDFIHQVKAE
Ga0213862_100027703	F097128	N/A	MDQKREIKEALEQILGSSIIMRDDGSDPVDELKNDFIKLITLYEEVWKRQNDLLEIQGLDFTSYDENYFRLIEGFIHFCFDGVAADAILFYIYSRQGDNDGTIFPFVDSKNQEHTFKTIDDLWEFLLYWAEEMMRP
Ga0213862_100027706	F033757	N/A	VVYVKKITVDNYDEFLQMALNQKFTMAQDIVETVLENLNTRKKEIPVFEIEVDSEGAIYTLSVQKDEFIKILNTNLIHFENEEAYEGCQKIIEAVNYLKTKNG