Scaffold Ga0213862_10002379

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10002379
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7778
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F008816	Metagenome / Metatranscriptome	327	N
F039144	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1000237910	F006939	AGGAG	MALDKTMVSNVIADNLNSFITVKFLTKTDEERVYNGRMNVQKGLKGNERGRIAAKALRSNGYVTLKTSEGYKCFNLDKVLAMKVGGRHIFCMGAEL
Ga0213862_1000237917	F008816	GGAG	MLFYTVLVLSYTLNGDYLQAKVIFPSYRACGDALPAYYEPVYAIDRNAIGQCLKTEVISASIKPKRRPL
Ga0213862_100023797	F039144	AGGAG	MLFKMSREYFCECCEFYKTFEEMHGDNDTICAVCQDWIEDQEEINSWEEEE