Scaffold Ga0213862_10002139

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10002139
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8149
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004952	Metagenome	417	Y
F005590	Metagenome / Metatranscriptome	395	N
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F020173	Metagenome	225	N
F054773	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1000213913	F005843	GGAGG	MTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPKPRPTQEAG
Ga0213862_1000213915	F009460	AGGAG	MAKWDLSKLENSASVGAHIDEDSSTPTQPTPQMIIMSIRRKADIMRMDAARKPERRTMKQRAEEIMALCEMLERRL
Ga0213862_1000213917	F005590	GGAGG	MTESLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHNELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQ
Ga0213862_100021396	F004952	AGGAG	MNLTHTHEFLITHITDSGTGFGVRTDNGESVHISPRLLQQAHANLDDICIGIIVQNAVEDQRERTPWVAAYVQERRAARDVLAATYGLDDSERFAKDEDGNTVVVAEVGEPKPKPVDWADVQRKIISMLQSADVSYCETADIADVVGVEPRKLSQHLENMHARGEICKAHVNQRANQQRATLVLWSINADVYK
Ga0213862_100021397	F020173	GGA	MICATCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEEEEE
Ga0213862_100021398	F054773	AGGAGG	MTKQENIISIVSEAVEKAWEGSSSAKEASEKYLAMLQQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQTVLNKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATSEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE