NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10001717

Scaffold Ga0213862_10001717


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10001717 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9073
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032266Metagenome180Y
F046979Metagenome / Metatranscriptome150Y
F085578Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000171715F085578AGGTGGMYEVIIEYDNQGPVVVMRSKDLSKCLDKQKRLIQAGHLDCFIARVKA
Ga0213862_100017173F032266AGGMSDAVKGVVFIDDAIDLSHDELKKKFKEAVENNEINHFEIQTRGKK
Ga0213862_100017174F046979GAGGMKCFNCNAYMEVIKETDISYYNYLFNLKLTFECKECGAVANAYPPKDDNQGLSHGR

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