Scaffold Ga0213862

Basic Information
Taxon OID	3300021347 Open in IMG/M
Scaffold ID	Ga0213862_10001191 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021347 Open in IMG/M

Scaffold ID

Ga0213862_10001191 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10988
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10988

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F045425	Metagenome	153	N
F070658	Metagenome	123	N
F080627	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1000119111	F045425	N/A	MPDATPYSARWTGPVLIPRGQDTTVSVSVELNGSAPTVSAVTFSLWDSSGTVLVDAGSASESGGLLSFTVTASVTTGQSLGQGYLLKFSATIGGDRHDFYNEAALCLSRLYPPVGTTDLTNRYSRLAALQTTGASDLQKFITDAWTELTSRLFSEGLPFWRMRTPSALRPWLTAQALVFALDDLALTLGDGGPYRDEARRIEQTLPRLYGQIRSRMDTDEDNTVGEEQQAASPVIILSSGRMGRYTR
Ga0213862_1000119112	F080627	GGA	VTYATALTAAIARLVAAGLVECRSPNGLLGAGAPRGHRSVACLPAGDRKQRSREAARVDGLRVTARFTVQLGHELKPGAGLEAPSQALQDLHSAQRDLIQPGTSLTTEGALTFGPVTTTRLQGGAYMIQVFELGITFNLDMSAP
Ga0213862_1000119113	F070658	GAG	VSVDLDIQLRSVERHLKRKHGERRVLTAGEYMVLLSGGQDVLIQLRAGWPIVTGRSRAGWDVQAIQRPFIGYRVSNGVDYSQWVHRSGEGPDPLWERQMLIIRDTILPPIVERLNRTITETERYSQPAQEQQPQRSLFLATPQQQTVDLFSQVRRLRRLVRRR
Ga0213862_1000119114	F033250	GGAGG	MDVNLSTVRQLSPVFEAGGTIDLEVLRPVLEQHAASMVEDARTGWPVDTGISREAWEAEIDVSPTELFVSLINEARQRGRGYAVYIHRARSQRLVWTEVQERLTLNLIPALQADIALTLAESMRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213862_10001191

Overview

Ecosystem & Geography

Associated Families

Sequences