NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213862_10000315

Scaffold Ga0213862_10000315


Overview

Basic Information
Taxon OID3300021347 Open in IMG/M
Scaffold IDGa0213862_10000315 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21295
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (70.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030435Metagenome / Metatranscriptome185Y
F033796Metagenome / Metatranscriptome176N
F036783Metagenome / Metatranscriptome169N
F065669Metagenome / Metatranscriptome127Y
F086976Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0213862_1000031526F030435N/AMNNQDILDMCRRLASKYYNHQDYDDIVSEGVVLCLKMRAEGIKEPSKLYYSARTAMFQYVNVGMSQLSYPKGMAGRDAVMEDRSVYISADEANIPAEDIFGSYELKDSIEVLKKELSAKEWRLFMVLYNNNNNLTEASKVLNVSRQAVEQIRNNIRYKLVTICDLAL
Ga0213862_1000031531F033796AGGAMSSRDENKTYKVAGVHIGKKGVTVLDGHERVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDNTPSVEINRQAEGSI
Ga0213862_1000031533F086976GGTGGMSGDKIPPINPVTGQFVRPLSGNKVYNTRQEVVEARISKEISTERFYELLGVYMEAHEEAPEYGFVGVGCISFAESVLQEHQDGVVRRIRIPTLYDEYSFKQESNDE
Ga0213862_1000031538F036783AGGAGMLEIVRQKYGSHVDTRVYVDIGYGEMEIDVEEIEMIDGELSAMAYCHQREIEMYADHKDCERALAKYEEENNNE
Ga0213862_1000031541F065669AGGAGMSKVVSPRVFIDTLESFFDEHGGHQRVIASAFAQYIHTNWDEYTGSFTDACGVRDILNTCYDLNLPPLDAIQWSQYVNHNASYLGES
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