Scaffold Ga0213862_10000276

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10000276
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22694
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F001942	Metagenome / Metatranscriptome	613	Y
F004956	Metagenome / Metatranscriptome	417	Y
F005495	Metagenome / Metatranscriptome	399	Y
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F013088	Metagenome / Metatranscriptome	274	Y
F018155	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1000027615	F008595	AGGAG	MSKEDNKMENQEPVIITYNGTEYRASDLNEEQMALAAKLNVAGKKLARLQDAYDDYVITNEYKNLVIESFDRAINAEEEVEVVEEE
Ga0213862_100002762	F005495	N/A	MLKWNGGSNTPNLNMKKYKILTDTMAGGSKVHAGDIVELPEHEGHALCGYGKAEVHVGKPKAEKQDRSVGLKTSKTKAPKTRAKK
Ga0213862_1000027620	F001942	N/A	VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFIFAAENSRSMSETYKHYTCDILAFVFFNEDKKRIMFKANTSSQNYFTFDSKVITESMELDSLKETLDNLSSVPVLNPLI
Ga0213862_1000027622	F007417	AGGAG	MTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKEKKQ
Ga0213862_1000027623	F008281	AGGAG	MNLMCNTKHGVIQWRWKDTGQPSPEYKSLNHQWWIPKKSDFELVTEVDASIKQEIKDEIWEDMQSDFDYQKGIYKIHKLNKKNLK
Ga0213862_100002763	F001582	N/A	MPLESALDFNAYVDTTTGHGVTATFFEVQSSLWDARQGLIDTWFDIDSGDAYSVNIIIDQEYFNIEGGTVPVAGYQPRAIIKSSDVPYISQEDKLVVDAITTDKGSVLKPETTFLVKTVEPDNTGLVSLVLEEQ
Ga0213862_1000027631	F013088	GGAG	MDEKTKKALWIPEELHKDIKVFAITNNMNIESATQLLLKLGMVSYKENNHGSK
Ga0213862_1000027632	F018155	AGGAG	MGQNSAAVEKRRKELEQEKLDKQIKTYYFQKGAGKHYREITYMSGKVVRTDFNA
Ga0213862_1000027635	F006845	AGG	MDLNSYLLEQDFEEYCRYAFERIQSACDFLGIINDEDYESFKERCYSELEANYLNSIEKTIH
Ga0213862_1000027636	F012117	AGGAG	MDILGGMSNSNNESQQVYLAFKTSHQQFFANGETPVDFQYMQLDPATFKSGWGRYTKVSGFEYVWDDKFTVISPQPADDYKRAFSAWVFPQGAQHAYLWQRFSWAESTAFNNILNGFWNQMDANSDSLPVVKFEGSKPIQVGAGNSSDIQFSFAKFAPRSDGFVIPQWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF
Ga0213862_100002766	F004956	AGGAG	MKMISPDGKVSIEAHPSKVESLLNMGWKEEAVHSQDKIKSSSKKKSKDEVENGNT