Scaffold Ga0213862_10000195

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10000195
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25465
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024923	Metagenome	204	N
F028551	Metagenome	191	Y
F044487	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1000019523	F028551	GGA	MDCVIQETVEGQELQNVVNMVHWRRAASEGTEGEENYYYADVYGAMPLTSPDPNDFVLYENLTEAKVEEWLNQMTDPTPAEMDEQLAANIELQKNPVEETLPLPWVS
Ga0213862_100001953	F044487	N/A	MSKDYEITYCAMECLEQTINILKEISKEYEWEDEQEFIKTIYMLSTLGYVISNDEYKDEMELFFKILGKKIKENQDIIKEAKYYANVT
Ga0213862_100001958	F024923	N/A	MSDQDDILIAEDWWLKPSLLPTSVWSYDKGKNGGYVADVKSVGRDIRLIGTKKQIREWWNKTGVEIKDIWHIELTEKHKELYERNCKKLVVIRLG