Scaffold Ga0213862_10000043

Overview

Basic Information

• Taxon OID: 3300021347
• Scaffold ID: Ga0213862_10000043
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45761
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (68.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004438	Metagenome / Metatranscriptome	438	Y
F010087	Metagenome / Metatranscriptome	308	Y
F062190	Metagenome / Metatranscriptome	131	N
F063082	Metagenome	130	N
F095320	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213862_1000004312	F063082	AGGAGG	VTQYKDVVEKQNQKLKEEKEANTIIELGWQREEMGKVSVIRHKRYRDRVEYEYSDKRKKPHTEWR
Ga0213862_1000004335	F010087	AGGAG	MSMRITGSDVKTSTTTSSATGGASLISGRSRLRGYIIAGGTSDGTVTFRDGSVTGSTLLIAPCNANDTETLNIPDSGVLFEDGVHVVLSNIDRVTIFHS
Ga0213862_1000004343	F062190	GGAG	MDKYDFIHALRKDLKSREEQVQDIVMSGGIKDMDNYQFLMGEISAISYIHDKIKEHLHDEGDIVDD
Ga0213862_1000004359	F095320	AGGAG	MKTTLQKCYEKMAMIKHNSDQLRLMAGKFDSGEPAVILVIDKDGGGTNVTPVAIMLDQGKIDTLNPDWEYSKKIYKVIEDATRIDKRTKVGDFAGQFIMIDELFDKADF
Ga0213862_1000004363	F004438	GAGG	MKNIYLILIGLFATSCATVNSVIEGGKDIAMTTVDTTVKTAGNISGAALKDVSGVVNTVAETYEGVIDTVVENIDEQTDELQNKPEESK