NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193719_10033040

Scaffold Ga0193719_10033040


Overview

Basic Information
Taxon OID3300021344 Open in IMG/M
Scaffold IDGa0193719_10033040 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2235
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9362Long. (o)-106.9425Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002588Metagenome / Metatranscriptome546Y
F096240Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0193719_100330401F096240N/AVQFPKFKHAVLTGAILGAVGPLLYYSSRPFRDYILGNGLLLWPTGVIIIVTYGHEHDFFGYAVIAISVALNIMLYAAAMALLWFVVWIIWRMATRTP
Ga0193719_100330402F002588N/AMRNFLTYLSERRKWASKGTGGVCGWVSLIVGATLAILIWFFPQWFHDHISDRMNAFVLVMVPLLAGASVFLVRWFVSPYPTYMQLRRKLDALTDTKKQERVKAVHGCFERSVVILKQHHSVLLSFHALSRAEGFRLESNKEVAEACDLIQEAGYDHPFKGISPGHVPEKDWLPFLKYVKHAPNINPEEGKDYLEAADRWRHDHGYPLPPEDADFALLFEKTLLR

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