Scaffold Ga0193719_10023871

Overview

Basic Information

• Taxon OID: 3300021344
• Scaffold ID: Ga0193719_10023871
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2617
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9362
  • Long. (^o): -106.9425
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F001932	Metagenome / Metatranscriptome	615	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193719_100238713	F001932	GAGG	MRHKLVVWFLLLLTGFLFGFILQYSRLRQMQQELSVSTKLLGSCQSSQKLSQLRDTATMMYLEAVQKNYGKAGEHSKEFFDQAQQIASNTDDPGLRNLLRDTLATRDQITADLAKGDAAALSAIQPILSKLQLTAKH
Ga0193719_100238714	F000065	N/A	PPLSHAGAIPDSDRAKRPPLSEPSATGQELTPGDRVEGLGNFGKPTGEFGTVERANEEDAVVKWDDDGRMRLHQPSLKKV