NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194041_10068118

Scaffold Ga0194041_10068118


Overview

Basic Information
Taxon OID3300021340 Open in IMG/M
Scaffold IDGa0194041_10068118 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-9m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1122
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035216Metagenome172Y
F068742Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0194041_100681182F068742N/AMSQNISISIDLKLIDQKKLKRITRQSGAEAAFLDLLLIPTPNSPYGEWMVKQRSTKEEVEAQVQTPILGNGKTAVKWEGQ
Ga0194041_100681183F035216N/ASSIIATGAFAVGRAQRRENRRLGAMVCEAHIPHRLEQPVSEIAKVRMELELALLQLESERLESDRLRSIIRSTLR

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