Scaffold Ga0194041_10038803

Overview

Basic Information

• Taxon OID: 3300021340
• Scaffold ID: Ga0194041_10038803
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L442-9m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1553
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.775
  • Long. (^o): -93.818

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008812	Metagenome / Metatranscriptome	327	Y
F057320	Metagenome / Metatranscriptome	136	Y
F089832	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194041_100388031	F008812	GAGG	MIQWVGILIAVLGLAYNGVKDYQKGDLKLSRLPQKQVLTKPVYPVQYCLMAYDPNINKVFYLHENGQWHDYSPQQRRYEATPQPYQNQSTTTVASSYGTQGTSSHRYGQSPQANTNPIR
Ga0194041_100388033	F089832	AGG	MSKYYIKCGTLELIYSTDKKPMAAAAEVLWEANKFDILDEHFYVDERGFKDYVTALPDTKVYKTEKIVTKAGWSME
Ga0194041_100388034	F057320	N/A	MSYVGLYDDEGSKNAFYIVKDKKINRKRVGFKEFENEQEAKFAHLVQSHLAQFDLAPMVYGDVGMIRRHDGELTCHGYLTEVARPMPECHDDDCDGECFGTDCKNGNTIDEVVYDLREHGLDYNDAHKGNFGYVRRKGKWVAVAIDLGVESFTEWDEDIYGQFDYDENDGYDGCGCIFCQQQRGY