Scaffold Ga0210341_1626790

Overview

Basic Information

• Taxon OID: 3300021337
• Scaffold ID: Ga0210341_1626790
• Source Dataset Name: Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.425 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 792
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.286
  • Long. (^o): -124.052
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000866	Metagenome / Metatranscriptome	855	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210341_16267902	F000866	GGA	MLFNIPYIADWNKIGDYRQRQTDLNTKRENNSRIDYDYKVGGKVLVRKDGILCKTESRYDSEPWTITSVHTNGTIRVERGSKSERLNIRRVTPFFE