NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210307_1185549

Scaffold Ga0210307_1185549


Overview

Basic Information
Taxon OID3300021336 Open in IMG/M
Scaffold IDGa0210307_1185549 Open in IMG/M
Source Dataset NameMetatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4165
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.233Long. (o)-123.886Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009267Metagenome / Metatranscriptome320N
F011222Metagenome / Metatranscriptome293N
F018136Metagenome / Metatranscriptome236N
F044972Metagenome / Metatranscriptome153N
F046247Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0210307_11855491F009267N/AMKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEIFSGNMDLVWKAAAFAFLHSEPTSSIRSVVNDKEAFVKAVDSWIEKNMAHHLEVGSMSDAMN
Ga0210307_11855492F011222N/AMECNKKFFHTINLKAAVALATLNFKMNKPPVTRLVRTDGKESTEFWFEGENDKGQDASQIYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0210307_11855493F044972N/AMPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKSATISLDGVVNGGVAYELANVLTLANDTTSYGVSGGAVIVDSVSEKTGAGSFKTITVSATQYPEI
Ga0210307_11855494F018136N/AMITDSTYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRKRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHAALFAS
Ga0210307_11855495F046247N/AMIIPPNEQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKDECDAEIARLGLVDVTAQENDNGLDIHADS
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