NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1162213

Scaffold Ga0213867_1162213


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1162213 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)761
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009303Metagenome / Metatranscriptome320Y
F037991Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_11622131F009303GAGGMLNVLKWVATATLIVGFGFFSAGYGFGWYLQITGGFLWLVAGVMMKDKPIIATNALMNTVGIIGKLFG
Ga0213867_11622132F037991AGGAGMKINQIIAEIHGMNRDDLNKVVEAVKYARSQAHRQMANTLKSGDTVFFDGKYGKTVKGTVIKTAIKYVSVDCGIEGKWRVPAAHLRLAA

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