NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1092185

Scaffold Ga0213867_1092185


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1092185 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1094
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012529Metagenome / Metatranscriptome280Y
F032993Metagenome / Metatranscriptome178Y
F051059Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10921852F032993GGAGMKINKYTESLPNMEIPQLPVSLLQHMEQLGLLPKSHEDDGVNNLDMLWVSEANYFRRDVLDERGEPLF
Ga0213867_10921853F051059AGGAGGMYYGLDIYSKASKKMFAYHSSDSRKDILHLKKMYGTNEFVYIKECYGDTDEDKQIYRESSKYGDTTVAS
Ga0213867_10921854F012529AGGAGGMLEDKTYKVKVGEWNDAVIYVYERHRKCLNPDDKPDDHRWKHWKEILTVIPVNNDFEDYQDTSGMFYNNVRATVDALAELYSSSPDYEMGIEYTMNTHPYINV

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