Scaffold Ga0213867_1078638

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1078638
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1210
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N
F031295	Metagenome	183	N
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10786382	F050005	AGGAGG	MYSKTNYPLYHEFKLMKFGNVLLNTNVDDILDQEIEETTVIINKLKDINQFLEV
Ga0213867_10786383	F024420	GGAGG	MTIYEELRKIIDRNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHNIKLYDAMTFKEILTLCRDYNVGGRFKXVD
Ga0213867_10786384	F010277	GGAGG	MSRLKDKLLEVELFVGEKLQDLTNDQVIKEVRKHFGSQMFVDYAEELLHEFQQEVNLERLQSW
Ga0213867_10786385	F031295	AGG	MVRAEEKLYNVISALTDEYNNYPHKRLKKSEVQDLVHDLEVVDAEFHDLKMPPITDDIQLDNRVCMFYVINQLKDMVTENDDQQKIIRLTEFYNQLIFNLGINALHNHKNEWENR