Scaffold Ga0213867_1035226

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1035226
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1968
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012718	Metagenome	278	Y
F013946	Metagenome	267	Y
F034713	Metagenome	174	Y
F074141	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10352261	F013946	N/A	MDSQSIIDSMLRGVMIAGVNRAVFERKPVFSMGTVNQGVRLGVASVGYDLVVRPAVKQVLPQLPLPNGK
Ga0213867_10352262	F012718	N/A	MSELLQFDLTDIPDNPSIVLAGRRRAGKGVLTKDLCYNFFRGKIKNVFLFSPTSEIAANGFDFVPYEFRYNEVEVDTIERIMKRQEYLIRNNPKGNHRILLIIDDIIAANDNKQQKILDKLFICARHYQISLIVCYQYIKKDFSPVQRDNVDIIFCFQQSNFDNKDALNKQYLSVNDNKKDGLDLINKYAKGFQTLTILNTTNSDKFEDFCFFYEADIINKKFKLGQEYE
Ga0213867_10352263	F034713	N/A	MVLLTFSFTGENTTGAATFTTTKEYKFKNLYLEDVKYNIFNENLENTIDKGTANDGLSSVNTLITSPLGIHMDFLDQQDCVLYSLGDGSGETLNTAQNINGLIPIGYAGKVGSQPISTRNTMSHSYPYKLISNRPQTWASGKSLVFNLYFRDVMTDGIIKDWAVMSGTTDAFSDINSISITLRLE
Ga0213867_10352264	F074141	N/A	MSDDLIDFKDPHYAKKNKMLCIYCSYKSAVPSKNNQFCSEICRLLHLSVSKELNVEDIGKLIKLSKIDLIHIILNLKCQNISIEGLHKILDKPYEYKQKMLVKNQGSFKLDFS