Scaffold Ga0213867_1026811

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1026811
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2314
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007825	Metagenome / Metatranscriptome	344	Y
F060808	Metagenome / Metatranscriptome	132	N
F073432	Metagenome	120	N
F105930	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10268113	F073432	GGAG	MTINNYDTIIKLADKGEVFEYYVGYLARDRFYNNDVRDKANLLMRLAENNIVELYQKRLTHGNINHDPKFQYLARKI
Ga0213867_10268116	F060808	GAGG	MAIDFDALDLIRGKNKAKRHEAIKQQQREQKEKDIKYFMNQLSEIKRDHDLCQDPAVKKLLLDKWYGVVKLCTKKIEEK
Ga0213867_10268117	F105930	N/A	MKEYTVIIPEMEFTIKAESEDDAELQAIGLFDWGNVDMEIEEIEKESEAK
Ga0213867_10268119	F007825	N/A	MTIQLYYKTKKELKNNIGSELDYSETNIFKDEYTSNGVVIGCDPQRKWFAKVTIKNNLIEKVQ