Scaffold Ga0213867_1023983

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1023983
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2464
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Chosvirus → Chosvirus KM23C739 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F005019	Metagenome	415	Y
F006528	Metagenome / Metatranscriptome	371	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10239831	F005019	AGCAG	MNMYGDIRTCIKCKNKADVVEKGKDYCASCWFRYFSGETIEQYEKRTNELEQARKNKK
Ga0213867_10239834	F006528	N/A	MKEIEKFSIKPIDIEELKLITFKNIIEGSRSVNGVTWNRIKNLKPKDQIQCLKQLSQ
Ga0213867_10239837	F002318	AGGAGG	MKVKDYISITKDLEQRNPGKKFYSFMDMENAEIRKKEVILPLPKKYFNKIVKFIKEEK