Scaffold Ga0213867_1023237

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1023237
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2509
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10232372	F002430	AGGAG	MTLKLPKKQVNAILVALDAEIEMQLGGRPVDWESFPEVAAMLMAYYTTRCKFDEDDCR
Ga0213867_10232375	F007346	AGGAG	MNSNEIKGIQLSQAVKWSGQDIFEVASAAFEDANYHSFNEVFYAAWTEFQKEYNDG
Ga0213867_10232376	F003073	AGGAG	MAKKLENMTTDERIAYWAAQREKERIQRRDRIGKLSIEQRAAVISVYNLLDSVLDVALYPDLGGIRAVSAYDLQELSDAKDTLQHQFNLKGE