Scaffold Ga0213867_1020978

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1020978
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2667
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017824	Metagenome	238	N
F047029	Metagenome	150	N
F051901	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_10209782	F047029	GGA	MSEAVGSTPNNPIKLNQYRVTLYPKHGATENIYMEAPDVYTAQMYTRRVYPDHRILAIKPVIDLVEERVL
Ga0213867_10209783	F004722	GAG	MSRTGREMMLEWLYREIRLAKTADLQRAAAFLEWARGIRKGCSKQRGGARVAQANAWRKGVDRDVRW
Ga0213867_10209785	F006109	N/A	MTRYVVMAGDRWVTAIYGPGKGIAVTRVKEDASSWPNYERAVVAARAAADCTNSPVAVHSVDEPAY
Ga0213867_10209786	F017824	N/A	MNNAVLQWKEDSERSQRLGEGRSRTSAEKSELFELMIWIGGQGAMRDLIRAESLQQAIEFAKNRYPNCRVDVPPKAAKRPKLARSHTSPSLVERRRKQAAEGK
Ga0213867_10209787	F051901	AGG	MTPPPKINFTKAAAEMARADYLDELFFKDGRDQLSHPMHGTYTGLYQKYTLKKLG