NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1017142

Scaffold Ga0213867_1017142


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1017142 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2995
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048962Metagenome147N
F091641Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_10171426F091641N/AMYQTLYQEILTQLILDALGITTHPFYKKRFGTDLDKKNAQKWLKRHNQDFQFICQMAGLVPSYVLKKYKFLQNNKRKINKLIKSYISRLDNYEKQREVIRRYVSATEIYVATKPRQHL
Ga0213867_10171427F048962GAGMAKKSDLGGQEIVEISGKHYRLPDFEEVVVEIPKVEKGEEAYKRVRKRHADIFEYYYNNHLLFPDNHNLNNDLYNAGLRLQQDIYYAGYYPKVTFDYVKEKIIGDRDKAAISKLGAQDRVRGALRKAGDYASIIYEVIVNNEPARSHISKFRKGLFRLCDYYEI
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