Scaffold Ga0213867_1016631

Overview

Basic Information

• Taxon OID: 3300021335
• Scaffold ID: Ga0213867_1016631
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3046
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018734	Metagenome / Metatranscriptome	233	N
F046018	Metagenome / Metatranscriptome	152	Y
F075434	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213867_101663110	F046018	AGGAG	MTINFIIFKVYIEKYTNWSNLKVSKDKYETIIDFGKYRLYLS
Ga0213867_10166312	F075434	GGAGG	MKIKYIATIKEWRDKTYGNTYFSANIDDIEKQKTHKIEFQYGYGGHAEHVCKEAIGLKGFTSDLPIKFITIPNCKQRDVKNFGQ
Ga0213867_10166315	F018734	N/A	MIGLGCQLIEGELEEVKINAIGYTKQGRALLDSQEHIFTEVFSEMEVLSAEQKLANLQDKYFKKY